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Systems Biology Papers

Collection of Historical and Current Papers on Systems Biology

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Author(s) Title Journal Year Volume Pages Links Free Article Subscription Required Times Cited (Google Scholar) Date of Analysis Comments
Kriete A, Lechner M, Clearfield D, Bohmann D. Computational systems biology of aging. Wiley Interdiscip Rev Syst Biol Med. 2011 3(4) 414-28 PUBMED JOURNAL +
Chuang HY, Hofree M, Ideker T. A decade of systems biology. Annu Rev Cell Dev Biol. 2010 26 721-44 PUBMED JOURNAL + 13 05/01/2012
Krallinger M, Leitner F, Valencia A. Analysis of biological processes and diseases using text mining approaches. Methods Mol Biol. 2010 593 341-82 PUBMED JOURNAL + 15 05/01/2012
Gehlenborg N, O‘Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC. Visualization of omics data for systems biology. Nat Methods 2010 7(3 Suppl.) S56-68 PUBMED JOURNAL + 70 05/01/2012
Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009 4(1) 44-57 PUBMED JOURNAL PDF 1366 05/01/2012
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009 10(1) 57-63 PUBMED JOURNAL + 791 05/01/2012
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL. The human disease network. Proc Natl Acad Sci U S A. 2007 104(21) 8685-90 PUBMEDJOURNAL PDF 640 05/01/2012
Boccaletti S, Latora V, Moreno Y, Chavez M, Hwang DU. Complex networks: Structure and dynamics Physics Reports 2006 424(4-5) 175-308 JOURNAL + 2544 05/01/2012
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O‘Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006 440(7084) 637-43 PUBMED JOURNAL PDF 1278 05/01/2012
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE. A human protein-protein interaction network: a resource for annotating the proteome. Cell 2005 122(6) 957-68 PUBMED JOURNAL PDF 912 05/01/2012
Blagoev B, Ong SE, Kratchmarova I, Mann M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat Biotechnol. 2004 22(9) 1139-45 PUBMED JOURNAL + 470 05/01/2012
Hood L, Heath JR, Phelps ME, Lin B. Systems biology and new technologies enable predictive and preventative medicine. Science 2004 306(5696) 640-3 PUBMED JOURNAL + 572 05/01/2012
Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 2003 422(6928) 198-207 PUBMED JOURNAL + 3567 05/01/2012
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL Jr, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM. A protein interaction map of Drosophila melanogaster. Science 2003 302(5651) 1727-36 PUBMED JOURNAL + 1606 05/01/2012
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003 19(4) 524-31 PUBMED JOURNAL PDF 1344 05/01/2012
Newman MEJ The structure and function of complex networks. SIAM Rev. 2003 45 167-256 JOURNAL PDF 7215 05/01/2012
Kitano H. Computational systems biology. Nature 2002 420(6912) 206-10 PUBMED JOURNAL + 1118 05/01/2012
Kitano H. Systems biology: A brief overview. Science 2002 295(5560) 1662-4 PUBMED JOURNAL + 2011 05/01/2012
Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED. Metabolic network structure determines key aspects of functionality and regulation. Nature 2002 420(6912) 190-3 PUBMED JOURNAL + 487 05/01/2012
Ideker T, Galitski T, Hood L A new approach to decoding life: Systems biology. Annu Rev Genomics Hum Genet. 2001 2 343-72 PUBMED JOURNAL PDF 964 05/01/2012
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. The large scale organization of metabolic networks. Nature 2000 407(6804) 651-4 PUBMED JOURNAL PDF 2929 05/01/2012
Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM. Systematic determination of genetic network architecture. Nat Genet. 1999 22(3) 281-5 PUBMED JOURNAL + 1945 05/01/2012
Watts DJ, Strogatz SH. Collective dynamics of ‘small-world‘ networks. Nature 1998 393(6684) 440-42 PUBMED JOURNAL + 14719 05/01/2012